Ingeneue Manual

Table of contents

• 1. Introduction
• 2. Elements of an Ingeneue Model
• 3. About Ingeneue Tutorials
• 4. Using Ingeneue
  • 4.1. Loading a Network File
  • 4.2. Running a Network
  • 4.3. Displaying and Hiding Nodes in the Cell View
  • 4.4. Changing Initial Concentrations
  • 4.5. Viewing and Changing Node Concentrations
  • 4.6. Running Models Automatically with an Iterator
  • 4.7. Examining Output Files from an Iterator
• 5. Network Files
  • 5.1. General Information
  • 5.2. Defining Nodes
  • 5.3. Parameters
  • 5.4. Affectors
  • 5.5. Specific Parameter Values
  • 5.6. Initial Conditions
• 6. Iterators
  • 6.1. An Overview of an Iterator file
  • 6.2. Restricting Parameter Values Relative to Each Other
  • 6.3. Searching Multiple Times using the ÜberIterator
• 7. Stoppers
  • 7.1. Combining Stoppers
• 8. Interface
  • 8.1. Interface for constructing and running models
• 9. Graphing and Calculating Statistics on Ingeneue Ouput Files
• 10. Programming Ingeneue
  • 10.1. Making a New Affector
  • 10.2. Making a New Iterator

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